MHC Motif Atlas: Class II alleles
To go back to the MHC class II motifs, click here.

Binding Core Offset

The following graph shows the distribution of the position of the binding core. An offset of 0 corresponds to a binding core at the middle of a peptide with an odd length, and is not defined for peptides with an even length.

N-terminal and C-terminal Motifs

The N-terminus and C-terminus of the peptide influence its binding property due to cleavage preference.
N-Terminus of the Peptide C-Terminus of the Peptide