Only tools that can be directly used, without retraining them are listed below
MHC Class I
MixMHCpred-2.2
Gfeller et al. 2022
Executable
NetMHCpan-4.1
Reynisson et al. 2020
Webserver
Executable, click on "Downloads"
MHCFlurry
O’Donnell et al. 2020
Executable
HLAthena
Sarkizova et al. 2019
WebServer
Executable, click on "Predict"
MHCnuggets
Shao et al. 2020
Executable
IEDB
Vita et al. 2018
Webserver
DeepSeqPan
Liu et al. 2019
Executable
BVMHC
Jiang et al. 2022
Webserver
NetMHCstabpan
Rasmussen et al. 2016
Webserver
Executable, click on "Downloads"
NetMHCcons
Karosiene et al. 2011
Webserver
Executable, click on "Downloads"
PickPocket
Zhang et al. 2009
Webserver
Executable, click on "Downloads"
SMM
Peters et al. 2005
Executable, in "Suppl. Material"
SMMPMBEC
Kim et al. 2009
Executable
HLA-bind
Vang et al. 2017
Executable
SYFPEITHI
Schuler et al. 2007
Webserver
MHC Class II
MixMHC2pred
Racle et al. 2022
Webserver
Executable
NetMHCIIpan-4.0
Reynisson et al. 2020
Webserver
Executable, click on "Downloads"
MARIA
Chen et al. 2019
Webserver
NeonMHC2
Abelin et al. 2019
Webserver
Executable
MHCnuggets
Shao et al. 2020
Executable
IEDB
Vita et al. 2018
Webserver
DeepSeqPanII
Liu et al. 2021
Executable
BVMHC
Jiang et al. 2022
Webserver
SYFPEITHI
Schuler et al. 2007
Webserver
MixMHCp (class I)
Gfeller et al. 2018
Webserver
Executable
MoDec (class II)
Racle et al. 2019
Executable
MHCMotifDecon-1.0
Kaabinejadian et al. 2022
Webserver
GibbsCluster-2.0
Andreatta et al. 2017
Webserver
Executable, click on "Downloads"
Immune Eptitope Database
Vita et al. 2018
Database
HLA ligand Atlas
Marcu et al. 2021
Database
SysteMHC Atlas
Shao et al. 2018
Database